CRAN Package Check Results for Package MethComp

Last updated on 2015-03-05 23:48:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.22 1.39 32.93 34.32 ERROR
r-devel-linux-x86_64-debian-gcc 1.22 1.48 33.44 34.92 ERROR
r-devel-linux-x86_64-fedora-clang 1.22 63.09 ERROR
r-devel-linux-x86_64-fedora-gcc 1.22 59.82 ERROR
r-devel-osx-x86_64-clang 1.22 62.39 ERROR
r-devel-windows-ix86+x86_64 1.22 6.00 44.00 50.00 ERROR
r-patched-linux-x86_64 1.22 1.53 31.59 33.12 ERROR
r-patched-solaris-sparc 1.22 384.00 ERROR
r-patched-solaris-x86 1.22 72.70 ERROR
r-release-linux-ix86 1.22 1.94 54.64 56.58 NOTE
r-release-linux-x86_64 1.22 1.46 30.89 32.34 ERROR
r-release-osx-x86_64-mavericks 1.22 NOTE
r-release-osx-x86_64-snowleopard 1.22 NOTE
r-release-windows-ix86+x86_64 1.22 5.00 42.00 47.00 ERROR
r-oldrel-windows-ix86+x86_64 1.22 6.00 49.00 55.00 ERROR

Check Details

Version: 1.22
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘nlme’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘BRugs’ ‘R2WinBUGS’ ‘coda’ ‘rjags’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    ':::' calls which should be '::':
     ‘base:::subset.data.frame’ ‘base:::transform.data.frame’
     ‘coda:::mcmc’ ‘coda:::mcmc.list’ ‘nlme:::VarCorr’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘VC.est.fixed’ ‘VC.est.random’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.22
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.VarComp
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.22
Check: R code for possible problems
Result: NOTE
    AltReg: no visible global function definition for ‘lme’
    BA.est: no visible global function definition for ‘lmeControl’
    MCmcmc: no visible global function definition for ‘jags.model’
    MCmcmc: no visible global function definition for ‘coda.samples’
    MCmcmc: no visible global function definition for ‘bugs’
    MCmcmc: no visible global function definition for ‘read.bugs’
    VC.est: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lme’
    VC.est.fixed: no visible global function definition for ‘pdIdent’
    VC.est.fixed: no visible global function definition for ‘varIdent’
    VC.est.fixed: no visible global function definition for ‘pdDiag’
    VC.est.fixed: no visible global function definition for ‘pdSymm’
    VC.est.random: no visible global function definition for ‘lmeControl’
    VC.est.random: no visible global function definition for ‘lme’
    VC.est.random: no visible global function definition for ‘pdBlocked’
    VC.est.random: no visible global function definition for ‘pdIdent’
    VC.est.random: no visible global function definition for ‘varIdent’
    VC.est.random: no visible global function definition for ‘ranef’
    VC.est.random: no visible global function definition for ‘pdDiag’
    addcols.mcmc: no visible global function definition for ‘as.mcmc.list’
    find.mean: no visible global function definition for ‘varnames’
    find.vars: no visible global function definition for ‘varnames’
    mcmc.MCmcmc: no visible global function definition for ‘as.mcmc’
    pairs.MCmcmc: no visible global function definition for ‘nchain’
    pairs.MCmcmc: no visible global function definition for ‘niter’
    pairs.MCmcmc: no visible global function definition for ‘varnames’
    post.mean: no visible global function definition for ‘as.mcmc’
    post.mean: no visible global function definition for ‘densityplot’
    post.sd: no visible global function definition for ‘as.mcmc’
    post.sd: no visible global function definition for ‘densityplot’
    subset.MCmcmc : char.2.num: no visible global function definition for
     ‘varnames’
    subset.MCmcmc: no visible global function definition for ‘nchain’
    trace.mean: no visible global function definition for ‘xyplot’
    trace.sd: no visible global function definition for ‘xyplot’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.22
Check: examples
Result: ERROR
    Running examples in ‘MethComp-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: check.MCmcmc
    > ### Title: Functions to graphically assess the convergence of the
    > ### MCMC-simulation in a MCmcmc object
    > ### Aliases: check.MCmcmc trace.MCmcmc post.MCmcmc pairs.MCmcmc
    > ### Keywords: models
    >
    > ### ** Examples
    >
    > # Load a provided MCmcmc object
    > data( ox.MC )
    > trace.MCmcmc( ox.MC, what="beta" )
    Loading required package: coda
    Error in trace.mean(obj, scales = scales, layout = layout, aspect = aspect, :
     could not find function "xyplot"
    Calls: trace.MCmcmc -> trace.mean
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.22
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BRugs’
Flavors: r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘nlme’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    ':::' calls which should be '::':
     ‘base:::subset.data.frame’ ‘base:::transform.data.frame’
     ‘coda:::mcmc’ ‘coda:::mcmc.list’ ‘nlme:::VarCorr’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘VC.est.fixed’ ‘VC.est.random’
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'nlme' which was already attached by Depends.
     Please remove these calls from your code.
    ':::' calls which should be '::':
     'base:::subset.data.frame' 'base:::transform.data.frame'
     'coda:::mcmc' 'coda:::mcmc.list' 'nlme:::VarCorr'
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     'VC.est.fixed' 'VC.est.random'
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard