CRAN Package Check Results for Package MethComp

Last updated on 2015-04-01 03:49:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.22.1 1.32 38.30 39.61 NOTE
r-devel-linux-x86_64-debian-gcc 1.22.2 1.93 37.76 39.69 NOTE
r-devel-linux-x86_64-fedora-clang 1.22.2 41.85 NOTE
r-devel-linux-x86_64-fedora-gcc 1.22.2 40.26 NOTE
r-devel-osx-x86_64-clang 1.22.2 49.76 NOTE
r-prerel-windows-ix86+x86_64 1.22.1 7.00 55.00 62.00 NOTE
r-prerel-linux-x86_64 1.22.1 1.28 38.15 39.44 NOTE
r-prerel-solaris-sparc 1.22.2 442.20 NOTE
r-prerel-solaris-x86 1.22.2 81.90 NOTE
r-release-linux-x86_64 1.22.1 1.48 41.80 43.28 NOTE
r-release-osx-x86_64-mavericks 1.22.1 NOTE
r-release-osx-x86_64-snowleopard 1.22.1 NOTE
r-release-windows-ix86+x86_64 1.22.2 6.00 63.00 69.00 NOTE
r-oldrel-windows-ix86+x86_64 1.22.1 8.00 71.00 79.00 NOTE

Check Details

Version: 1.22.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘nlme’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘BRugs’ ‘R2WinBUGS’ ‘coda’ ‘rjags’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Missing or unexported object: ‘coda::coda.samples’
    ':::' call which should be '::': ‘nlme:::VarCorr’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘VC.est.fixed’ ‘VC.est.random’
Flavors: r-devel-linux-x86_64-debian-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.22.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.VarComp
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-prerel-linux-x86_64

Version: 1.22.1
Check: R code for possible problems
Result: NOTE
    AltReg: no visible global function definition for ‘lme’
    BA.est: no visible global function definition for ‘lmeControl’
    MCmcmc: no visible global function definition for ‘jags.model’
    MCmcmc: no visible global function definition for ‘bugs’
    MCmcmc: no visible global function definition for ‘read.bugs’
    VC.est: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lme’
    VC.est.fixed: no visible global function definition for ‘pdIdent’
    VC.est.fixed: no visible global function definition for ‘varIdent’
    VC.est.fixed: no visible global function definition for ‘pdDiag’
    VC.est.fixed: no visible global function definition for ‘pdSymm’
    VC.est.random: no visible global function definition for ‘lmeControl’
    VC.est.random: no visible global function definition for ‘lme’
    VC.est.random: no visible global function definition for ‘pdBlocked’
    VC.est.random: no visible global function definition for ‘pdIdent’
    VC.est.random: no visible global function definition for ‘varIdent’
    VC.est.random: no visible global function definition for ‘ranef’
    VC.est.random: no visible global function definition for ‘pdDiag’
    find.mean: no visible global function definition for ‘varnames’
    find.vars: no visible global function definition for ‘varnames’
    pairs.MCmcmc: no visible global function definition for ‘varnames’
    subset.MCmcmc : char.2.num: no visible global function definition for
     ‘varnames’
Flavors: r-devel-linux-x86_64-debian-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.22.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘nlme’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘BRugs’ ‘R2WinBUGS’ ‘coda’ ‘rjags’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    ':::' call which should be '::': ‘nlme:::VarCorr’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘VC.est.fixed’ ‘VC.est.random’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-windows-ix86+x86_64

Version: 1.22.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.VarComp
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.22.2
Check: R code for possible problems
Result: NOTE
    AltReg: no visible global function definition for ‘lme’
    BA.est: no visible global function definition for ‘lmeControl’
    MCmcmc: no visible global function definition for ‘jags.model’
    MCmcmc: no visible global function definition for ‘bugs’
    MCmcmc: no visible global function definition for ‘read.bugs’
    VC.est: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lme’
    VC.est.fixed: no visible global function definition for ‘pdIdent’
    VC.est.fixed: no visible global function definition for ‘varIdent’
    VC.est.fixed: no visible global function definition for ‘pdDiag’
    VC.est.fixed: no visible global function definition for ‘pdSymm’
    VC.est.random: no visible global function definition for ‘lmeControl’
    VC.est.random: no visible global function definition for ‘lme’
    VC.est.random: no visible global function definition for ‘pdBlocked’
    VC.est.random: no visible global function definition for ‘pdIdent’
    VC.est.random: no visible global function definition for ‘varIdent’
    VC.est.random: no visible global function definition for ‘ranef’
    VC.est.random: no visible global function definition for ‘pdDiag’
    find.mean: no visible global function definition for ‘varnames’
    find.vars: no visible global function definition for ‘varnames’
    pairs.MCmcmc: no visible global function definition for ‘varnames’
    subset.MCmcmc : char.2.num: no visible global function definition for
     ‘varnames’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-windows-ix86+x86_64

Version: 1.22.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BRugs’
Flavors: r-devel-osx-x86_64-clang, r-prerel-solaris-sparc, r-prerel-solaris-x86

Version: 1.22.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BRugs’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.22.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'nlme' which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: 'nlme'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Missing or unexported object: 'coda::coda.samples'
    ':::' call which should be '::': 'nlme:::VarCorr'
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     'VC.est.fixed' 'VC.est.random'
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64