CRAN Package Check Results for Package MethComp

Last updated on 2014-04-24 09:49:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.22 1.55 44.48 46.03 NOTE
r-devel-linux-x86_64-debian-gcc 1.22 1.48 44.55 46.03 NOTE
r-devel-linux-x86_64-fedora-clang 1.22 100.88 NOTE
r-devel-linux-x86_64-fedora-gcc 1.22 99.37 NOTE
r-devel-osx-x86_64-clang 1.22 83.86 NOTE
r-devel-osx-x86_64-gcc 1.22 NOTE
r-devel-windows-ix86+x86_64 1.22 4.00 62.00 66.00 NOTE
r-patched-linux-x86_64 1.22 1.57 43.28 44.85 NOTE
r-patched-solaris-sparc 1.22 535.90 NOTE
r-patched-solaris-x86 1.22 111.70 NOTE
r-release-linux-ix86 1.22 3.00 70.00 73.00 NOTE
r-release-linux-x86_64 1.22 1.51 43.93 45.44 NOTE
r-release-osx-x86_64-mavericks 1.22 ERROR
r-release-osx-x86_64-snowleopard 1.22 NOTE
r-release-windows-ix86+x86_64 1.22 4.00 69.00 73.00 NOTE
r-oldrel-windows-ix86+x86_64 1.22 6.00 63.00 69.00 NOTE

Check Details

Version: 1.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘nlme’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    ':::' calls which should be '::':
     ‘base:::subset.data.frame’ ‘base:::transform.data.frame’
     ‘coda:::mcmc’ ‘coda:::mcmc.list’ ‘nlme:::VarCorr’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘VC.est.fixed’ ‘VC.est.random’
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.22
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BRugs’
Flavors: r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-snowleopard

Version: 1.22
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘BRugs’ ‘rjags’ ‘lme4’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.22
Check: R code for possible problems
Result: NOTE
    MCmcmc: no visible global function definition for ‘jags.model’
    MCmcmc: no visible global function definition for ‘coda.samples’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.22
Check: examples
Result: ERROR
    Running examples in ‘MethComp-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: rainman
    > ### Title: Perception of points in a swarm
    > ### Aliases: rainman
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > library(MethComp)
    > data( rainman )
    > str( rainman )
    'data.frame': 30 obs. of 6 variables:
     $ SAND: int 120 48 88 32 24 100 52 80 72 96 ...
     $ ME : int 175 50 150 45 25 125 70 145 85 110 ...
     $ TM : int 120 50 75 22 22 80 50 75 90 110 ...
     $ AJ : int 105 45 75 28 25 91 48 68 55 84 ...
     $ BM : int 100 50 60 30 20 80 45 55 60 65 ...
     $ LO : int 100 70 80 30 20 70 50 60 60 65 ...
    > RM <- Meth( rainman, item=1, y=2:6 )
    The following variables from the dataframe
    "rainman" are used as the Meth variables:
    item: SAND
     y: ME TM AJ BM LO
     #Replicates
    Method 3 #Items #Obs: 150 Values: min med max
     AJ 10 10 30 18 57 120
     BM 10 10 30 15 62 120
     LO 10 10 30 20 55 100
     ME 10 10 30 24 90 200
     TM 10 10 30 20 75 120
    > head( RM )
     meth item repl y
    1 ME 120 1 175
    2 ME 48 1 50
    3 ME 88 1 150
    4 ME 32 1 45
    5 ME 24 1 25
    6 ME 100 1 125
    > BA.est( RM, linked=FALSE )
    
     Conversion between methods:
     alpha beta sd.pred LoA-lo LoA-up
    To: From:
    AJ AJ 0.000 1.000 13.903 -27.806 27.806
     BM -2.000 1.000 13.876 -29.752 25.752
     LO 10.400 1.000 18.443 -26.486 47.286
     ME -34.967 1.000 29.132 -93.231 23.298
     TM -8.400 1.000 15.183 -38.767 21.967
    BM AJ 2.000 1.000 13.876 -25.752 29.752
     BM 0.000 1.000 13.849 -27.698 27.698
     LO 12.400 1.000 18.423 -24.445 49.245
     ME -32.967 1.000 29.119 -91.205 25.272
     TM -6.400 1.000 15.159 -36.717 23.917
    LO AJ -10.400 1.000 18.443 -47.286 26.486
     BM -12.400 1.000 18.423 -49.245 24.445
     LO 0.000 1.000 17.803 -35.605 35.605
     ME -45.367 1.000 31.552 -108.471 17.738
     TM -18.800 1.000 19.426 -57.653 20.053
    ME AJ 34.967 1.000 29.132 -23.298 93.231
     BM 32.967 1.000 29.119 -25.272 91.205
     LO 45.367 1.000 31.552 -17.738 108.471
     ME 0.000 1.000 29.624 -59.249 59.249
     TM 26.567 1.000 29.764 -32.962 86.096
    TM AJ 8.400 1.000 15.183 -21.967 38.767
     BM 6.400 1.000 15.159 -23.917 36.717
     LO 18.800 1.000 19.426 -20.053 57.653
     ME -26.567 1.000 29.764 -86.096 32.962
     TM 0.000 1.000 16.364 -32.727 32.727
    
     Variance components (sd):
     IxR MxI res
    AJ 0 0.001 9.831
    BM 0 0.001 9.793
    LO 0 9.221 12.588
    ME 0 17.699 20.948
    TM 0 0.002 11.571
    > library(lme4)
    Error in library(lme4) : there is no package called ‘lme4’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'nlme' which was already attached by Depends.
     Please remove these calls from your code.
    ':::' calls which should be '::':
     'base:::subset.data.frame' 'base:::transform.data.frame'
     'coda:::mcmc' 'coda:::mcmc.list' 'nlme:::VarCorr'
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     'VC.est.fixed' 'VC.est.random'
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard