CRAN Package Check Results for Package PLSbiplot1

Last updated on 2020-02-18 23:48:42 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1 6.87 48.86 55.73 ERROR
r-devel-linux-x86_64-debian-gcc 0.1 7.15 55.68 62.83 NOTE
r-devel-linux-x86_64-fedora-clang 0.1 101.52 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1 94.95 NOTE
r-devel-windows-ix86+x86_64 0.1 13.00 82.00 95.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 0.1 20.00 113.00 133.00 NOTE
r-patched-linux-x86_64 0.1 7.28 66.09 73.37 NOTE
r-patched-solaris-x86 0.1 126.70 NOTE
r-release-linux-x86_64 0.1 6.90 66.29 73.19 NOTE
r-release-windows-ix86+x86_64 0.1 10.00 75.00 85.00 NOTE
r-release-osx-x86_64 0.1 ERROR
r-oldrel-windows-ix86+x86_64 0.1 8.00 76.00 84.00 NOTE
r-oldrel-osx-x86_64 0.1 NOTE

Check Details

Version: 0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'SensoMineR'
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1
Check: R code for possible problems
Result: NOTE
    Mag.Bmat.plot: no visible global function definition for 'plot'
    Mag.Bmat.plot: no visible global function definition for 'lines'
    Mag.Bmat.plot: no visible global function definition for 'text'
    Mag.Bmat.plot: no visible global function definition for 'legend'
    PCA.biplot: no visible binding for global variable 'sd'
    PCA.biplot_no.SN: no visible binding for global variable 'sd'
    PLS.GLM.biplot: no visible binding for global variable 'sd'
    PLS.GLM.biplot: no visible global function definition for 'sd'
    PLS.GLM.biplot_SIMPLS: no visible binding for global variable 'sd'
    PLS.GLM.biplot_SIMPLS: no visible global function definition for 'sd'
    PLS.GLM.biplot_SIMPLS_no.SN: no visible binding for global variable
     'sd'
    PLS.GLM.biplot_SIMPLS_no.SN: no visible global function definition for
     'sd'
    PLS.GLM.biplot_no.SN: no visible binding for global variable 'sd'
    PLS.GLM.biplot_no.SN: no visible global function definition for 'sd'
    PLS.GLM.biplot_no_labels: no visible binding for global variable 'sd'
    PLS.GLM.biplot_no_labels: no visible global function definition for
     'sd'
    PLS.biplot: no visible binding for global variable 'sd'
    PLS.biplot.area: no visible binding for global variable 'sd'
    PLS.biplot_no.SN: no visible binding for global variable 'sd'
    PLS.biplot_no_labels: no visible binding for global variable 'sd'
    SPLS.GLM.biplot: no visible binding for global variable 'sd'
    SPLS.GLM.biplot: no visible global function definition for 'sd'
    SPLS.GLM.biplot_no.SN: no visible binding for global variable 'sd'
    SPLS.GLM.biplot_no.SN: no visible global function definition for 'sd'
    SPLS.biplot: no visible binding for global variable 'sd'
    SPLS.biplot_no_ax.labels: no visible binding for global variable 'sd'
    SPLS.biplot_no_labels: no visible binding for global variable 'sd'
    cov.biplot: no visible global function definition for 'cov'
    cov.biplot: no visible global function definition for 'plot'
    cov.biplot: no visible global function definition for 'arrows'
    cov.biplot: no visible global function definition for 'text'
    cov.monoplot: no visible global function definition for 'cov'
    cov.monoplot: no visible global function definition for 'plot'
    cov.monoplot: no visible global function definition for 'arrows'
    cov.monoplot: no visible global function definition for 'text'
    draw.biplot : .samples.plot: no visible global function definition for
     'text'
    draw.biplot : .samples.plot: no visible global function definition for
     'points'
    draw.biplot : .predict.func: no visible global function definition for
     'lines'
    draw.biplot : .marker.label.cm: no visible global function definition
     for 'par'
    draw.biplot : .marker.label.cm: no visible global function definition
     for 'lines'
    draw.biplot : .marker.label.cm: no visible global function definition
     for 'text'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'coefficients'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'lm'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'abline'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'par'
    draw.biplot : .lin.axes.plot: no visible global function definition for
     'mtext'
    draw.biplot : .bags.plot: no visible global function definition for
     'lines'
    draw.biplot : .bags.plot: no visible global function definition for
     'points'
    draw.biplot : .ellipse.plot: no visible global function definition for
     'lines'
    draw.biplot : .new.samples.plot: no visible global function definition
     for 'points'
    draw.biplot : .new.samples.plot: no visible global function definition
     for 'text'
    draw.biplot : .class.means.plot: no visible global function definition
     for 'points'
    draw.biplot : .class.means.plot: no visible global function definition
     for 'text'
    draw.biplot : .density.plot: no visible global function definition for
     'colorRampPalette'
    draw.biplot : .density.plot: no visible global function definition for
     'image'
    draw.biplot : .density.plot: no visible global function definition for
     'contour'
    draw.biplot : .density.legend: no visible global function definition
     for 'par'
    draw.biplot : .density.legend: no visible global function definition
     for 'plot'
    draw.biplot : .density.legend: no visible global function definition
     for 'rect'
    draw.biplot : .density.legend: no visible global function definition
     for 'axis'
    draw.biplot: no visible global function definition for 'par'
    draw.biplot: no visible global function definition for 'layout'
    draw.biplot: no visible global function definition for 'plot'
    draw.biplot: no visible global function definition for 'arrows'
    draw.biplot.with.triangles : .samples.plot: no visible global function
     definition for 'text'
    draw.biplot.with.triangles : .samples.plot: no visible global function
     definition for 'points'
    draw.biplot.with.triangles : .predict.func: no visible global function
     definition for 'lines'
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for 'par'
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for 'lines'
    draw.biplot.with.triangles : .marker.label.cm: no visible global
     function definition for 'text'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'coefficients'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'lm'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'abline'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'par'
    draw.biplot.with.triangles : .lin.axes.plot: no visible global function
     definition for 'mtext'
    draw.biplot.with.triangles : .bags.plot: no visible global function
     definition for 'lines'
    draw.biplot.with.triangles : .bags.plot: no visible global function
     definition for 'points'
    draw.biplot.with.triangles : .ellipse.plot: no visible global function
     definition for 'lines'
    draw.biplot.with.triangles : .new.samples.plot: no visible global
     function definition for 'points'
    draw.biplot.with.triangles : .new.samples.plot: no visible global
     function definition for 'text'
    draw.biplot.with.triangles : .class.means.plot: no visible global
     function definition for 'points'
    draw.biplot.with.triangles : .class.means.plot: no visible global
     function definition for 'text'
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for 'colorRampPalette'
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for 'image'
    draw.biplot.with.triangles : .density.plot: no visible global function
     definition for 'contour'
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for 'par'
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for 'plot'
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for 'rect'
    draw.biplot.with.triangles : .density.legend: no visible global
     function definition for 'axis'
    draw.biplot.with.triangles: no visible global function definition for
     'par'
    draw.biplot.with.triangles: no visible global function definition for
     'layout'
    draw.biplot.with.triangles: no visible global function definition for
     'plot'
    draw.biplot.with.triangles: no visible global function definition for
     'polygon'
    draw.biplot.with.triangles: no visible global function definition for
     'rainbow'
    draw.biplot.with.triangles: no visible global function definition for
     'arrows'
    opt.penalty.values: no visible global function definition for
     'flush.console'
    Undefined global functions or variables:
     abline arrows axis coefficients colorRampPalette contour cov
     flush.console image layout legend lines lm mtext par plot points
     polygon rainbow rect sd text
    Consider adding
     importFrom("grDevices", "colorRampPalette", "rainbow")
     importFrom("graphics", "abline", "arrows", "axis", "contour", "image",
     "layout", "legend", "lines", "mtext", "par", "plot",
     "points", "polygon", "rect", "text")
     importFrom("stats", "coefficients", "cov", "lm", "sd")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1
Check: examples
Result: ERROR
    Running examples in 'PLSbiplot1-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: PLS.biplot_no.SN
    > ### Title: The Partial Least Squares (PLS) biplot with no sample points
    > ### names
    > ### Aliases: PLS.biplot_no.SN
    >
    > ### ** Examples
    >
    > if(require(pls))
    + data(oliveoil, package="pls")
    Loading required package: pls
    
    Attaching package: 'pls'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    > X = as.matrix(oliveoil$chemical, ncol=5)
    > dimnames(X) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
    + "S1","S2","S3","S4","S5","S6")),
    + paste(c("Acidity","Peroxide","K232","K270","DK")))
    > Y = as.matrix(oliveoil$sensory, ncol=6)
    > dimnames(Y) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
    + "S1","S2","S3","S4","S5","S6")),
    + paste(c("Yellow","Green","Brown","Glossy","Transp","Syrup")))
    > PLS.biplot_no.SN(X, Y, algorithm=mod.SIMPLS, ax.tickvec.X=c(8,5,5,5,5),
    + ax.tickvec.Y=c(5,8,5,6,9,8))
    $overall.quality
    [1] 0.972
    
    $axis.pred
     Acidity Peroxide K232 K270 DK Yellow Green Brown
     0.988 0.995 0.999 0.989 0.753 0.934 0.819 0.963
     Glossy Transp Syrup
     0.997 0.994 0.998
    
    $D.hat
     Acidity Peroxide K232 K270 DK Yellow Green Brown Glossy Transp
    G1 0.756 13.49 1.80 0.1487 0.001917 26.7 65.1 9.45 76.9 71.5
    G2 0.179 12.88 1.66 0.1075 -0.002936 58.9 23.2 12.80 82.4 80.7
    G3 0.229 11.46 1.56 0.1035 -0.002986 60.6 22.4 10.55 83.9 82.2
    G4 0.629 13.68 1.80 0.1413 0.000945 32.9 56.8 10.61 77.7 73.0
    G5 0.511 10.85 1.56 0.1191 -0.000901 47.5 40.2 7.71 82.4 79.1
    I1 0.299 18.80 2.12 0.1454 -0.000111 35.2 49.1 19.79 73.6 69.7
    I2 0.270 15.37 1.86 0.1261 -0.001422 46.8 36.9 15.45 78.3 75.5
    I3 0.309 17.01 1.99 0.1371 -0.000588 39.9 44.5 17.34 75.8 72.3
    I4 0.322 14.47 1.80 0.1250 -0.001289 46.8 37.8 13.87 79.1 76.2
    I5 0.156 20.13 2.20 0.1428 -0.000844 38.8 43.2 22.59 72.9 69.6
    S1 0.186 11.40 1.55 0.1004 -0.003354 63.0 19.2 10.78 84.3 82.9
    S2 0.261 10.16 1.47 0.0991 -0.003132 62.7 20.8 8.59 85.3 83.8
    S3 0.250 11.53 1.57 0.1053 -0.002790 59.2 24.1 10.48 83.6 81.8
    S4 0.171 11.28 1.53 0.0988 -0.003514 64.2 17.8 10.73 84.6 83.3
    S5 0.224 9.42 1.40 0.0929 -0.003666 66.8 16.0 7.88 86.6 85.4
    S6 0.239 10.11 1.46 0.0973 -0.003332 64.0 19.1 8.69 85.6 84.2
     Syrup
    G1 48.7
    G2 47.5
    G3 46.6
    G4 48.7
    G5 46.6
    I1 51.8
    I2 49.4
    I3 50.6
    I4 48.8
    I5 52.6
    S1 46.5
    S2 45.8
    S3 46.7
    S4 46.4
    S5 45.2
    S6 45.7
    
    $Bmat
     Yellow Green Brown Glossy Transp Syrup
    Acidity -1.175 1.343 -1.1120 -0.357 -0.604 -0.119
    Peroxide -0.921 0.675 2.3788 -1.638 -1.364 1.862
    K232 -1.169 0.977 1.9839 -1.646 -1.448 1.741
    K270 -1.365 1.301 0.9420 -1.348 -1.314 1.206
    DK -1.042 1.071 0.0458 -0.748 -0.818 0.515
    
    >
    > #cocktail data
    > if(require(SensoMineR))
    + data(cocktail, package="SensoMineR")
    Loading required package: SensoMineR
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'SensoMineR'
    > X3 = as.matrix(compo.cocktail, ncol=4)
    Error in as.matrix(compo.cocktail, ncol = 4) :
     object 'compo.cocktail' not found
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘mixOmics’
Flavor: r-release-osx-x86_64

Version: 0.1
Check: examples
Result: ERROR
    Running examples in ‘PLSbiplot1-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Mag.Bmat.plot
    > ### Title: Magnitude of the Partial Least Squares Regression (PLSR)
    > ### coefficients matrix
    > ### Aliases: Mag.Bmat.plot
    >
    > ### ** Examples
    >
    > if(require(pls))
    + data(oliveoil, package="pls")
    Loading required package: pls
    
    Attaching package: ‘pls’
    
    The following object is masked from ‘package:stats’:
    
     loadings
    
    > X = as.matrix(oliveoil$chemical, ncol=5)
    > dimnames(X) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
    + "S1","S2","S3","S4","S5","S6")),
    + paste(c("Acidity","Peroxide","K232","K270","DK")))
    > Y = as.matrix(oliveoil$sensory, ncol=6)
    > dimnames(Y) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
    + "S1","S2","S3","S4","S5","S6")),
    + paste(c("Yellow","Green","Brown","Glossy","Transp","Syrup")))
    > Mag.Bmat.plot(X, Y, algorithm=mod.SIMPLS, A=2)
    >
    > #nutrimouse data
    > if(require(mixOmics))
    + data(nutrimouse, package="mixOmics")
    Loading required package: mixOmics
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘mixOmics’
    > X1 = as.matrix(nutrimouse$lipid, ncol=21)
    Error in as.matrix(nutrimouse$lipid, ncol = 21) :
     object 'nutrimouse' not found
    Execution halted
Flavor: r-release-osx-x86_64