bnpsd: Simulate Genotypes from the BN-PSD Admixture Model

The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

Version: 1.1.1
Imports: stats
Suggests: popkin (≥ 1.2.2), testthat, knitr, rmarkdown, RColorBrewer
Published: 2019-05-15
Author: Alejandro Ochoa ORCID iD [aut, cre], John D. Storey ORCID iD [aut]
Maintainer: Alejandro Ochoa <alejandro.ochoa at duke.edu>
BugReports: https://github.com/StoreyLab/bnpsd/issues
License: GPL-3
URL: https://github.com/StoreyLab/bnpsd/
NeedsCompilation: no
Citation: bnpsd citation info
Materials: NEWS
CRAN checks: bnpsd results

Downloads:

Reference manual: bnpsd.pdf
Vignettes: Simulate Genotypes from the BN-PSD Admixture Model
Package source: bnpsd_1.1.1.tar.gz
Windows binaries: r-devel: bnpsd_1.1.1.zip, r-devel-gcc8: bnpsd_1.1.1.zip, r-release: bnpsd_1.1.1.zip, r-oldrel: bnpsd_1.1.1.zip
OS X binaries: r-release: bnpsd_1.1.1.tgz, r-oldrel: bnpsd_1.1.1.tgz
Old sources: bnpsd archive

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