phangorn: Phylogenetic analysis in R

Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)

Version: 1.99-7
Depends: R (≥ 2.15.0), ape (≥ 3.0-11)
Imports: quadprog, igraph (≥ 0.6), Matrix, fastmatch
Suggests: parallel, rgl, seqLogo, seqinr, xtable, flashClust, phytools
Published: 2014-02-02
Author: Klaus Schliep, Emmanuel Paradis
Maintainer: Klaus Schliep <klaus.schliep at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: phangorn citation info
Materials: NEWS
In views: Genetics, Phylogenetics
CRAN checks: phangorn results

Downloads:

Reference manual: phangorn.pdf
Vignettes: Ancestral sequence Reconstruction
Constructing phylogenetic trees
Advanced features
Package source: phangorn_1.99-7.tar.gz
Windows binaries: r-devel: phangorn_1.99-7.zip, r-release: phangorn_1.99-7.zip, r-oldrel: phangorn_1.99-7.zip
OS X Snow Leopard binaries: r-release: phangorn_1.99-7.tgz, r-oldrel: phangorn_1.99-7.tgz
OS X Mavericks binaries: r-release: phangorn_1.99-7.tgz
Old sources: phangorn archive

Reverse dependencies:

Reverse imports: coalescentMCMC, corHMM, OUwie, paleotree, phytools, poppr, RADami, recluster, SeqFeatR