phylin: Spatial Interpolation of Genetic Data

The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.

Version: 2.0.1
Suggests: geometry, raster, gdistance
Published: 2019-11-19
Author: Pedro Tarroso, Guillermo Velo-Anton, Silvia Carvalho
Maintainer: Pedro Tarroso <ptarroso at cibio.up.pt>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://www.r-project.org, https://github.com/ptarroso/phylin
NeedsCompilation: no
Citation: phylin citation info
In views: MissingData
CRAN checks: phylin results

Downloads:

Reference manual: phylin.pdf
Vignettes: Phylin: a step-by-step tutorial
Phylin with resistance
Package source: phylin_2.0.1.tar.gz
Windows binaries: r-devel: phylin_2.0.1.zip, r-devel-gcc8: phylin_2.0.1.zip, r-release: phylin_2.0.1.zip, r-oldrel: phylin_2.0.1.zip
OS X binaries: r-release: phylin_2.0.1.tgz, r-oldrel: phylin_2.0.1.tgz
Old sources: phylin archive

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